Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | V | X | Z A abundance_test() (in module regvelo.metrics) adata (regvelo.REGVELOVI attribute) adata_manager (regvelo.REGVELOVI attribute) add_module() (regvelo.VELOVAE method) add_regvelo_outputs_to_adata() (regvelo.REGVELOVI method) apply() (regvelo.VELOVAE method) B bfloat16() (regvelo.VELOVAE method) buffers() (regvelo.VELOVAE method) C calculate() (regvelo.ModelComparison method) call_super_init (regvelo.VELOVAE attribute) cellfate_perturbation() (in module regvelo.metrics) (in module regvelo.plotting) children() (regvelo.VELOVAE method) commitment_score() (in module regvelo.plotting) compile() (regvelo.VELOVAE method) compute_shared_time() (regvelo.REGVELOVI method) convert_legacy_save() (regvelo.REGVELOVI class method) cpu() (regvelo.VELOVAE method) cuda() (regvelo.VELOVAE method) D deregister_manager() (regvelo.REGVELOVI method) device (regvelo.REGVELOVI attribute) (regvelo.VELOVAE attribute) double() (regvelo.VELOVAE method) dump_patches (regvelo.VELOVAE attribute) E eval() (regvelo.VELOVAE method) evaluate() (regvelo.ModelComparison method) extra_repr() (regvelo.VELOVAE method) F filter_genes() (in module regvelo.preprocessing) float() (regvelo.VELOVAE method) forward() (regvelo.VELOVAE method) freeze_mapping() (regvelo.VELOVAE method) G generative() (regvelo.VELOVAE method) get_anndata_manager() (regvelo.REGVELOVI method) get_buffer() (regvelo.VELOVAE method) get_directional_uncertainty() (regvelo.REGVELOVI method) get_elbo() (regvelo.REGVELOVI method) get_extra_state() (regvelo.VELOVAE method) get_from_registry() (regvelo.REGVELOVI method) get_latent_representation() (regvelo.REGVELOVI method) get_latent_time() (regvelo.REGVELOVI method) get_loadings() (regvelo.VELOVAE method) get_marginal_ll() (regvelo.REGVELOVI method) get_parameter() (regvelo.VELOVAE method) get_permutation_scores() (regvelo.REGVELOVI method) get_px() (regvelo.VELOVAE method) get_rates() (regvelo.REGVELOVI method) get_reconstruction_error() (regvelo.REGVELOVI method) get_significance() (regvelo.ModelComparison method) get_submodule() (regvelo.VELOVAE method) get_velocity() (regvelo.REGVELOVI method) H half() (regvelo.VELOVAE method) hindbrain() (in module regvelo.datasets) hindbrain_grn() (in module regvelo.datasets) history (regvelo.REGVELOVI attribute) human_limb() (in module regvelo.datasets) I in_silico_block_regulation_simulation() (in module regvelo.tools) in_silico_block_simulation() (in module regvelo.tools) inference() (regvelo.VELOVAE method) inferred_grn() (in module regvelo.tools) ipu() (regvelo.VELOVAE method) is_trained (regvelo.REGVELOVI attribute) L load() (regvelo.REGVELOVI class method) load_registry() (regvelo.REGVELOVI static method) load_state_dict() (regvelo.VELOVAE method) loss() (regvelo.VELOVAE method) M markov_density_simulation() (in module regvelo.tools) min_max_scaling() (regvelo.ModelComparison method) model_load() (regvelo.ModelComparison method) model_save() (regvelo.ModelComparison method) ModelComparison (class in regvelo) module regvelo regvelo.metrics regvelo.plotting regvelo.preprocessing regvelo.tools modules() (regvelo.VELOVAE method) mtia() (regvelo.VELOVAE method) murine_nc() (in module regvelo.datasets) N named_buffers() (regvelo.VELOVAE method) named_children() (regvelo.VELOVAE method) named_modules() (regvelo.VELOVAE method) named_parameters() (regvelo.VELOVAE method) O on_load() (regvelo.VELOVAE method) P parameters() (regvelo.VELOVAE method) pearson_correlation_loss() (regvelo.VELOVAE method) perturbation_effect() (in module regvelo.tools) plot_results() (regvelo.ModelComparison method) preprocess_data() (in module regvelo.preprocessing) R register_backward_hook() (regvelo.VELOVAE method) register_buffer() (regvelo.VELOVAE method) register_forward_hook() (regvelo.VELOVAE method) register_forward_pre_hook() (regvelo.VELOVAE method) register_full_backward_hook() (regvelo.VELOVAE method) register_full_backward_pre_hook() (regvelo.VELOVAE method) register_load_state_dict_post_hook() (regvelo.VELOVAE method) register_load_state_dict_pre_hook() (regvelo.VELOVAE method) register_manager() (regvelo.REGVELOVI class method) register_module() (regvelo.VELOVAE method) register_parameter() (regvelo.VELOVAE method) register_state_dict_post_hook() (regvelo.VELOVAE method) register_state_dict_pre_hook() (regvelo.VELOVAE method) regulation_scanning() (in module regvelo.tools) regulatory_network() (in module regvelo.plotting) regvelo module regvelo.metrics module regvelo.plotting module regvelo.preprocessing module regvelo.tools module REGVELOVI (class in regvelo) requires_grad_() (regvelo.VELOVAE method) result_load() (regvelo.ModelComparison method) result_save() (regvelo.ModelComparison method) rgv_expression_fit() (regvelo.REGVELOVI method) root_time() (regvelo.VELOVAE method) S sample() (regvelo.VELOVAE method) sanity_check() (in module regvelo.preprocessing) save() (regvelo.REGVELOVI method) schwann() (in module regvelo.datasets) set_extra_state() (regvelo.VELOVAE method) set_output() (in module regvelo.tools) set_prior_grn() (in module regvelo.preprocessing) set_submodule() (regvelo.VELOVAE method) setup_anndata() (regvelo.REGVELOVI class method) share_memory() (regvelo.VELOVAE method) simulated_visit_diff() (in module regvelo.plotting) (in module regvelo.tools) state_dict() (regvelo.VELOVAE method) summary_string (regvelo.REGVELOVI attribute) T T_destination (regvelo.VELOVAE attribute) test_indices (regvelo.REGVELOVI attribute) TFScanning_func() (in module regvelo.tools) TFscreening() (in module regvelo.tools) to() (regvelo.VELOVAE method) to_device() (regvelo.REGVELOVI method) to_empty() (regvelo.VELOVAE method) train() (regvelo.ModelComparison method) (regvelo.REGVELOVI method) (regvelo.VELOVAE method) train_indices (regvelo.REGVELOVI attribute) training (regvelo.VELOVAE attribute) type() (regvelo.VELOVAE method) V validate_input() (regvelo.ModelComparison method) validation_indices (regvelo.REGVELOVI attribute) VELOVAE (class in regvelo) view_anndata_setup() (regvelo.REGVELOVI method) view_setup_args() (regvelo.REGVELOVI static method) X xpu() (regvelo.VELOVAE method) Z zebrafish_grn() (in module regvelo.datasets) zebrafish_nc() (in module regvelo.datasets) zebrafish_perturb() (in module regvelo.datasets) zero_grad() (regvelo.VELOVAE method)