regvelo.plotting.regulatory_network

regvelo.plotting.regulatory_network(motif, figsize=(4, 4), **kwargs)

Visualize a gene regulatory network (GRN) from a DataFrame.

Parameters:

• motif (DataFrame) – DataFrame with regulatory edges. Expected format: [regulator, target, sign], where sign is 1 for activation and -1 for inhibition.

• figsize (tuple[int, int]) – Figure size for the plot. Default is (4, 4).

• **kwargs (Any) –

  Additional optional parameters:

  • inhibition_color: color for inhibition edges.

  • activation_color: color for activation edges.

  • self_activation_color: color for self-activation nodes.

  • self_inhibition_color: color for self-inhibition nodes.

  • node_color: color for nodes.

  • edge_color: color for edges.

Return type:

None

Returns:

: Nothing, just plots the figure.