API

Import regvelo as:

import regvelo as rgv

• Datasets
  • regvelo.datasets.zebrafish_nc
  • regvelo.datasets.zebrafish_grn
  • regvelo.datasets.zebrafish_perturb
  • regvelo.datasets.murine_nc
  • regvelo.datasets.human_limb
  • regvelo.datasets.hindbrain
  • regvelo.datasets.hindbrain_grn
  • regvelo.datasets.schwann
• Preprocessing
  • regvelo.preprocessing.preprocess_data
  • regvelo.preprocessing.set_prior_grn
  • regvelo.preprocessing.sanity_check
  • regvelo.preprocessing.filter_genes
• Model
  • regvelo.REGVELOVI
  • regvelo.VELOVAE
  • regvelo.ModelComparison
• Tools
  • regvelo.tools.inferred_grn
  • regvelo.tools.perturbation_effect
  • regvelo.tools.set_output
  • regvelo.tools.in_silico_block_simulation
  • regvelo.tools.in_silico_block_regulation_simulation
  • regvelo.tools.TFScanning_func
  • regvelo.tools.markov_density_screening
  • regvelo.tools.TFscreening_wrapper
  • regvelo.tools.markov_density_simulation
  • regvelo.tools.simulated_visit_diff
  • regvelo.tools.regulation_scanning
  • regvelo.tools.compute_TF_regulon
• Metrics
  • regvelo.metrics.abundance_test
  • regvelo.metrics.cellfate_perturbation
• Plotting
  • regvelo.plotting.commitment_score
  • regvelo.plotting.cellfate_perturbation
  • regvelo.plotting.simulated_visit_diff
  • regvelo.plotting.regulatory_network
  • regvelo.plotting.plot_visits_dist
  • regvelo.plotting.plot_visits_dist_screen
  • regvelo.plotting.plot_TF_success_rate
  • regvelo.plotting.plot_grn_weight
  • regvelo.plotting.plot_TF_regulon